WebMar 8, 2013 · ChIPseeqer workflow Giannopoulou and Elemento BMC Bioinformatics 2011 12:277 doi: 10.1186/1471-2105-12 -277 95. ChIPseeqer GUI Giannopoulou and Elemento BMC Bioinformatics 2011 12:277 doi: 10.1186/1471-210 5-12-277 96. Factorbook.org (ENCODE ChIP-seq data) 97. Factorbook (ENCODE) RXR entry 98. WebChIPseeker: ChIP peak Annotation, Comparison, and Visualization . This package implements functions to retrieve the nearest genes around the peak, annotate genomic region of the peak, statstical methods for …
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WebJul 7, 2011 · ChIPseeqer facilitates ChIP-seq data analysis by offering a flexible and powerful set of computational tools that can be used in combination with one another. … WebWe use ChIP-seq, RNA-seq, computational modeling to investigate how genes are regulated in cancer cells and how gene regulation in cancer cells differs from normal cells. Cancer genomics and precision medicine. Using novel computational algorithms, we seek to identify new cancer mutations and understand why and where cancer mutations occur. onslaught transformers combiner wars
(PDF) An integrated ChIP-seq analysis platform with customizable ...
WebFeb 11, 2011 · ChIPseeqer GUI: Load raw data [ edit] How it works 1. Select the format of your raw data files. Supported formats are: bed, eland, exteland, sam, bowtiesam, export (and some more described in detail here ). 2. Select a folder that contains only the ChIP files. 3. (Optional) Select a folder that contains only the INPUT files. 4. WebChIPseeqer [7] is an integrative and comprehensive framework that allows the users to perform in-depth analysis of ChIP-seq datasets through easily customised workflows. … WebJan 30, 2012 · ChIPseeqer TUTORIAL. This is a comprehensive step-by-step tutorial on how to use the ChIPseeqer tools to analyze ChIP-seq data. To run the tools directly from … onslaught transformers toy